# .msa version 002 # pred m observ m off rank dif %dif sd nac hex fuc neuac neugc S good 1579.78 1579.31 0 100 0.0 0.0 0.0 2 5 0 0 0 .10 10 C (Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN) (0) (carbNlink_35518_A) 1590.80 1590.33 0 100 0.0 0.0 0.0 3 3 1 0 0 .10 10 C (GN??Ma3(Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35288_A) 1661.84 1661.33 0 100 0.0 0.0 0.0 4 3 0 0 0 .10 10 C (GN??Ma3(GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35551_A) 1753.87 1753.38 0 100 0.0 0.0 0.0 2 5 1 0 0 .10 10 C (Ma3(Ma3(Ma6)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35294_A) 1783.88 1783.43 0 100 0.0 0.0 0.0 2 6 0 0 0 .10 10 C (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN) (0) (carbNlink_35521_A) 1835.92 1835.49 0 100 0.0 0.0 0.0 4 3 1 0 0 .10 10 C (GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35426_A) 1865.94 1865.53 0 100 0.0 0.0 0.0 4 4 0 0 0 .10 10 C (A??GN??Ma3(GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35552_A) 1906.96 1906.53 0 100 0.0 0.0 0.0 5 3 0 0 0 .10 10 C (GN??(GN??)Ma3(GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35550_A) 1987.98 1987.56 0 100 0.0 0.0 0.0 2 7 0 0 0 .10 10 C (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M) (0) (carbNlink_35062_A) 2040.02 2039.59 0 100 0.0 0.0 0.0 4 4 1 0 0 .10 10 C (A??GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35428_A) 2070.03 2069.61 0 100 0.0 0.0 0.0 4 5 0 0 0 .10 10 C (A??GN??Ma3(A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35563_A) 2081.05 2080.64 0 100 0.0 0.0 0.0 5 3 1 0 0 .10 10 C (GN??(GN??)Ma3(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35424_A) 2111.06 2110.64 0 100 0.0 0.0 0.0 5 4 0 0 0 .10 10 C (GNb4(A??GN??Ma3)(GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35548_A) 2192.08 2191.68 0 100 0.0 0.0 0.0 2 8 0 0 0 .10 10 C (Ma2Ma3(Ma3(Ma6)Ma6)Mb4GNb4GN,M,M) (0) (carbNlink_35061_A) 2203.10 2202.70 0 100 0.0 0.0 0.0 3 6 1 0 0 .10 10 C (A??GN??Ma3(Ma3(Ma6)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35297_A) 2214.11 2213.72 0 100 0.0 0.0 0.0 4 4 2 0 0 .10 10 C (A??(Fa3)GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35427_A) 2244.12 2243.73 0 100 0.0 0.0 0.0 4 5 1 0 0 .10 10 C (A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35470_A) 2285.15 2284.75 0 100 0.0 0.0 0.0 5 4 1 0 0 .10 10 C (GNb4(A??GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35422_A) 2396.18 2395.80 0 100 0.0 0.0 0.0 2 9 0 0 0 .10 10 C (Ma2Ma2Ma3(Ma2Ma3(Ma2Ma6)Ma6)Mb4GNb4GN) (0) (carbNlink_35527_A) 2418.21 2417.84 0 100 0.0 0.0 0.0 4 5 2 0 0 .10 10 C (A??(Fa3)GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35468_A) 2431.21 2430.84 0 100 0.0 0.0 0.0 4 5 0 1 0 .10 10 C (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35566_A) 2431.21 2430.84 0 100 0.0 0.0 0.0 4 4 1 0 1 .10 10 C (NJ??A??GN??Ma3(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35429_A) 2448.22 2447.86 0 100 0.0 0.0 0.0 4 6 1 0 0 .10 10 C (A??A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35472_A) 2459.24 2458.87 0 100 0.0 0.0 0.0 5 4 2 0 0 .10 10 C (GNb4(A??(Fa3)GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35419_A) 2489.25 2488.89 0 100 0.0 0.0 0.0 5 5 1 0 0 .10 10 C (GNb4(A??GN??Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35456_A) 2592.30 2591.95 0 100 0.0 0.0 0.0 4 5 3 0 0 .10 10 C (A??(Fa3)GN??Ma3(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35442_A) 2600.28 2599.93 0 100 0.0 0.0 0.0 2 10 0 0 0 .10 10 C (Ga3Ma2Ma2Ma3(Ma2Ma3(Ma2Ma6)Ma6)Mb4GNb4GN) (0) (carbNlink_35528_A) 2605.30 2604.94 0 100 0.0 0.0 0.0 4 5 1 1 0 .10 10 C (NN??A??GN??Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35474_A) 2633.33 2633.00 0 100 0.0 0.0 0.0 5 4 3 0 0 .10 10 C (GNb4((Fa3)A??(Fa3)GN??Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35420_A) 2663.34 2662.99 0 100 0.0 0.0 0.0 5 5 2 0 0 .10 10 C (GNb4(A??(Fa3)GN??Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35454_A) 2693.35 2692.98 0 100 0.0 0.0 0.0 5 6 1 0 0 .10 10 C (A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35461_A) 2809.40 2809.07 0 100 0.0 0.0 0.0 4 5 2 0 1 .10 10 C (A??(Fa3)GN??Ma3(NJ??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35497_A) 2809.40 2809.07 0 100 0.0 0.0 0.0 4 6 1 1 0 .10 10 C (NN??A??GN??Ma3(A??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35491_A) 2822.39 2822.06 0 100 0.0 0.0 0.0 4 5 0 1 1 .10 10 C (NN??A??GN??Ma3(NJ??A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35574_A) 2837.43 2837.10 0 100 0.0 0.0 0.0 5 5 3 0 0 .10 10 C (GNb4(A??(Fa3)GN??Ma3)(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35435_A) 2852.40 2852.07 0 100 0.0 0.0 0.0 4 5 0 0 2 .10 10 C (NJ??A??GN??Ma3(NJ??A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35573_A) 2867.44 2867.09 0 100 0.0 0.0 0.0 5 6 2 0 0 .10 10 C (A??(Fa3)GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35460_A) 2908.47 2908.14 0 100 0.0 0.0 0.0 6 5 2 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??GN??)Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35414_A) 2966.47 2966.15 0 100 0.0 0.0 0.0 4 5 1 2 0 .10 10 C (NN??A??GN??Ma3(NN??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35513_A) 2996.48 2996.14 0 100 0.0 0.0 0.0 4 5 1 1 1 .10 10 C (NN??A??GN??Ma3(NJ??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35499_A) 3026.49 3026.20 0 100 0.0 0.0 0.0 4 5 1 0 2 .10 10 C (NJ??A??GN??Ma3(NJ??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35498_A) 3041.53 3041.22 0 100 0.0 0.0 0.0 5 6 3 0 0 .10 10 C (A??(Fa3)GN??(A??GN??)Ma3(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35439_A) 3054.52 3054.21 0 100 0.0 0.0 0.0 5 6 1 1 0 .10 10 C (NN??A??GN??(A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35463_A) 3054.52 3054.21 0 100 0.0 0.0 0.0 5 5 2 0 1 .10 10 C (GNb4(A??(Fa3)GN??Ma3)(NJ??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35492_A) 3082.55 3082.25 0 100 0.0 0.0 0.0 6 5 3 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35412_A) 3112.57 3112.25 0 100 0.0 0.0 0.0 6 6 2 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??GN??)Ma3)(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35450_A) 3215.62 3215.33 0 100 0.0 0.0 0.0 5 6 4 0 0 .10 10 C (A??(Fa3)GN??(A??(Fa3)GN??)Ma3(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35437_A) 3286.65 3286.36 0 100 0.0 0.0 0.0 6 6 3 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??GN??)Ma3)(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35434_A) 3357.69 3357.48 0 100 0.0 0.0 0.0 7 6 2 0 0 .10 10 C (GNb4(GN??(A??GN??)Ma3)(A??GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35332_A) 3445.71 3445.43 0 100 0.0 0.0 0.0 5 7 0 2 0 .10 10 C (NN??A??GN??(NN??A??GN??)Ma3(A??A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35568_A) 3460.74 3460.49 0 100 0.0 0.0 0.0 6 6 4 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35432_A) 3475.72 3475.54 0 100 0.0 0.0 0.0 5 6 1 0 2 .10 10 C (NJ??A??GN??(NJ??A??GN??)Ma3(A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35465_A) 3475.72 3475.54 0 100 0.0 0.0 0.0 5 7 0 1 1 .10 10 C (NJ??A??GN??(NN??A??GN??)Ma3(A??A??GN??Ma6)Mb4GNb4GN) (0) (carbNlink_35567_A) 3490.75 3490.42 0 100 0.0 0.0 0.0 6 7 3 0 0 .10 10 C (A??(Fa3)GN??(A??GN??)Ma3(A??GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35335_A) 3531.78 3531.49 0 100 0.0 0.0 0.0 7 6 3 0 0 .10 10 C (GNb4(A??(Fa3)GN??(GN??)Ma3)(A??GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35330_A) 3649.81 3649.51 0 100 0.0 0.0 0.0 5 6 2 0 2 .10 10 C (NJ??A??GN??(NJ??A??GN??)Ma3(A??(Fa3)GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35441_A) 3649.81 3649.51 0 100 0.0 0.0 0.0 5 7 1 1 1 .10 10 C (NJ??A??GN??(NN??A??GN??)Ma3(A??A??GN??Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35485_A) 3664.84 3664.60 0 100 0.0 0.0 0.0 6 7 4 0 0 .10 10 C (A??(Fa3)GN??(A??(Fa3)GN??)Ma3(A??GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35334_A) 3690.83 3691.58 0 100 0.0 0.0 0.0 6 7 0 2 0 .10 10 C (NN??A??GN??(NN??A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4GN) (0) (carbNlink_35535_A) 3705.87 3705.60 0 100 0.0 0.0 0.0 7 6 4 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35323_A) 3735.88 3735.62 0 100 0.0 0.0 0.0 7 7 3 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35350_A) 3838.93 3838.63 0 100 0.0 0.0 0.0 6 7 5 0 0 .10 10 C (A??(Fa3)GN??(A??(Fa3)GN??)Ma3(A??(Fa3)GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35329_A) 3864.92 3864.84 0 100 0.0 0.0 0.0 6 7 1 2 0 .10 10 C (NN??A??GN??(NN??A??GN??)Ma3(A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35359_A) 3909.97 3909.73 0 100 0.0 0.0 0.0 7 7 4 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35349_A) 3954.95 3954.67 0 100 0.0 0.0 0.0 6 8 0 0 2 .10 10 C (A??A??GN??(A??GN??)Ma3(NJ??A??GN??(NJ??A??GN??)Ma6)Mb4GNb4GN) (0) (carbNlink_35539_A) 4084.06 4083.83 0 100 0.0 0.0 0.0 7 7 5 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??(A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35326_A) 4114.07 4113.75 0 100 0.0 0.0 0.0 7 8 4 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??(A??A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35375_A) 4127.06 4126.82 0 100 0.0 0.0 0.0 7 8 2 1 0 .10 10 C (GNb4(A??A??GN??(A??(Fa3)GN??)Ma3)(NN??A??GN??(A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35360_A) 4301.15 4300.82 0 100 0.0 0.0 0.0 7 8 3 1 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(NN??A??GN??(A??A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35379_A) 4518.25 4519.30 0 100 0.0 0.0 0.0 7 8 2 1 1 .10 10 C (GNb4(NJ??A??GN??(A??A??GN??)Ma3)(A??(Fa3)GN??(NN??A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35399_A) 4518.25 4519.30 0 100 0.0 0.0 0.0 7 7 3 0 2 .10 10 C (GNb4(NJ??A??GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??(NJ??A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35380_A) 4518.25 4519.30 0 100 0.0 0.0 0.0 7 9 1 2 0 .10 10 C (GNb4(NN??A??GN??(A??A??GN??)Ma3)(A??A??GN??(NN??A??GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35400_A) 4533.28 4533.34 0 100 0.0 0.0 0.0 8 8 5 0 0 .10 10 C (GNb4(A??(Fa3)GN??(A??(Fa3)GN??)Ma3)(A??(Fa3)GN??(A??GN??A??(Fa3)GN??)Ma6)Mb4GNb4(Fa6)GN) (0) (carbNlink_35346_A)